2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 | 1995 | 1994
2009
Keeling, P. J. 2009. The endosymbiotic origin, diversification, and
fate of plastids. Proc. Roy Soc. Lond., in press.
Carpenter, K. J., Horak, A., and Keeling, P. J. 2009. Phylogenetic
position and morphology of Spirotrichosomidae (Parabasalia): new
evidence from Leptospironympha of Cryptocercus punctulatus. Protist,
in press.
Corradi, N., Haag, K. L., Pombert, J. F., Ebert, D., and Keeling, P. J. 2009.
Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content
of a large microsporidian genome and a model for host-parasite interactions. Genome Biol. 10, R106.
(PDF)
Keeling, P. J. 2009. A 1673 view of the microbial universe. Make 20,
125-128. (PDF)
Burki, F., Inagaki, I. Brate, J., Archibald, J. M., Keeling, P. J.,
Cavalier-Smith, T. Horak, A., Sakaguchi, M. Hashimoto, T., Klaveness,
D. Jokobsen, K. S., Pawlowski, J., and Shalchian-Tabrizi, K. 2009.
Early evolution of eukaryotes: two enigmatic heterotrophic groups are
related to photosynthetic chromalveolates. Genom. Biol. Evol. 1,
231-238. (PDF)
Keeling, P. J. 2009. Five things to know about Microsporidia. PLoS
Pathog. 5, e1000489. (PDF)
Corradi, N. and Keeling, P. J. 2009. Microsporidia: a journey through
radical taxonomic revisions. Fungal Biology Reviews, 23, 1-8. (PDF)
Keeling, P. J. 2009. Functional and ecological impacts of horizontal
gene transfer in eukaryotes. Curr. Opin. Genet. Dev., 19, 613-619. (PDF)
Keeling, P. J. 2009. Creationists Made Me Do It. Science 325, 945. (PDF)
Redhead, S. A., Kirk, P. M., Keeling, P. J., and Weiss, L. M. 2009.
Proposals to exclude the phylum Microsporidia from the Code (048-051).
Taxon 58, 669. (PDF)
Redhead, S. A., Kirk, P. M., Keeling, P. J., and Weiss, L. M. 2009.
Proposals 048-051 to amend the International Code of Botanical
Nomenclature. Mycotaxon 108, 505-507.
Elias, M. Patron, N. J. and Keeling, P. J. 2009. Phylogenetic analysis
of RAB1 GTPase reveals a unique paraloge shared by chromalveolates and
chrlorarachniophytes. J. Eukaryot. Microbiol. 56, 348-356. (PDF)
Okamoto, N., Chantangsi, C. Horak, A. Leander, B. S., and Keeling, P.
J. 2009. Molecular phylogenetic position and description of the novel
karablepharid Roombia truncata gen. et sp. Nov., and establishment of
the Hacrobia taxon nov. PLoS One 17, e7080. (PDF)
Gile, G. H., Novis, P. M., Cragg, D. S., Zuccarello, G. C., and
Keeling, P. J. 2009. The distribution of EF-1alpha, EFL, and a non-
canonical genetic code in the Ulvophyceae: discrete genetic
characters support a consistent phylogenetic framework. J. Eukaryot.
Microbiol. 56, 367-372.
Elias, M., Patron, N. J. and Keeling, P. J. 2009. The RAB family
GTPase Rab1A from Plasmodium falciparum defines a unique paralog
shared by chromalveolates and rhizaria. J. Eukaryot. Microbiol. 56,
348-356. (PDF)
Lukes, J., Leander, B.S. and Keeling, P. J. 2009. Cascades of
convergent evolution: the corresponding evolutionary histories of
euglenozoans and dinoflagellates. Proc. Natl. Acad. Sci. USA 106,
9963-9970. (PDF)
Harper, J. T., Gile, G. H., James, E. R., Carpenter, K. J. and
Keeling, P. J. 2009. The inadequacy of morphology for species and
genus delineation in microbial eukaryotes: an example from the
parabasalian termite symbiont Coronympha. PLoS One 4, e6577. (PDF)
Slamovits, C. H. and Keeling, P. J. 2009. Evolution of ultrasmall
introns in highly reduced nuclear genomes. Mol. Biol. Evol. 26,
1699-1705. (PDF)
Carpenter, K. J., Chow, L. and Keeling, P. J. 2009. Morphology,
phylogeny, and diversity of Trichonympha (Parabasalia:
Hypermastigida) of the wood-feeding cockroach Cryptocercus
puntulatus. J. Eukaryot. Microbiol. 56, 305-313. (PDF)
Gile, G. H., Faktorova, D., Castlejohn, C. A., Burger, G., Lang, B.
F., Farmer, M. A., Lukes, J. and Keeling, P. J. 2009. Distribution
and phylogeny of EFL and EF-1alpha in Euglenozoa suggests ancestral
co-occurrence followed by differential loss. PLoS One 4, e5162. (PDF)
Keeling, P. J. 2009. Role of horizontal gene transfer in the
evolution of photosynthetic eukaryotes and their plastids. Methods
Mol. Biol. 532, 501-515. (PDF)
Akiyoshi, D. E., Morrison, H. G., Lei, S., Feng, X., Zhang, Q.
Corradi, N. Mayanja, H., Tumwine, J. K., Keeling, P. J., Weiss, L.
M., Tzipori, S. 2009. Genomic survey of the non-cultivatable
opportunistic human pathogen, Enterocytozoon bieneusi. PLoS Pathog.
5, e1000216. (PDF)
Keeling, P.J. 2009. Chromalveolates and the evolution of plastids by secondary endosymbiosis. J. Eukaryot.
Microbiol. 56, 1-8. (PDF)
2008
Lee, R. C., Williams, B. A., Brown, A. M., Adamson, M. L., Keeling,
P. J., and Fast, N. M. 2008. Alpha- and beta-tubulin phylogenies
support a close relationship between the microsporidia Brachiola
algerae and Antonospora locustae. J. Eukaryot. Microbiol. 55, 388-392.
(PDF)
Williams, B. A., Lee, R. C., Becnel, J. J., Weiss, L. M., Fast, N.
M., and Keeling, P. J. 2008. Genome sequence surveys of Brachiola
algerae and Edhazardia aedis reveal microsporidia with low gene
densities. BMC Genomics 9, 200. (PDF)
Corradi, N. Burri, L., and Keeling, P.J. 2008. mRNA processing in Antonospora locustae spores. Mol. Gen.
Genom., 280, 565-574. (PDF)
Lee, S. C., Corradi, N., Byrnew, E. J., Torres-Martinez, S., Dietrich, F. S., Keeling, P.J., and Heitman, J. 2008. Microsporidia evolved from ancestral sexual fungi. Curr. Biol. 18, 1675-1679. (PDF)
Keeling, P. J. and Archibald, J. M. 2008. Organelle evolution: what's in a name? Curr. Biol. 18, R345-347.
(PDF)
McEwan, M. L., Humayun, R., Slamovits, C. H. and Keeling, P. J. 2008. Nuclear genome sequence survey of the dinoflagellate Heterocapsa triquetra. J. Eukaryot. Microbiol., 55(6), 530-535. (PDF)
Gile, G. H. and Keeling, P. J. 2008. Nucleus-encoded periplastid-targeted EFL in chlorarachniophytes. Mol. Biol. Evol., 25(9):1967-1977. (PDF)
Keeling, P. J. and Palmer, J. D. 2008. Horizontal gene transfer in eukaryotic evolution. Nat. Rev. Genet., 9, 605-618. (PDF)
Slamovits, C. H. and Keeling, P. J. 2008. Widespread recycling of processed cDNAs in dinoflagellates. Curr. Biol. 18, R550-R552.
(PDF)
Slamovits, C. H., Keeling, P. J. 2008. Plastid-derived genes in the non-photosynthetic alveolate Oxyrrhis marina. Mol. Biol. Evol. 25,
1297-1306. (PDF)
Williams, B. A. P., Cali, A., Takvorian, P. M. and Keeling, P. J. 2008. Distinct localization patterns of two putative mitochondrial proteins
in the microsporidian Encephalitozoon cuniculi. J. Eukaryot. Microbiol. 55, 131-133.
(PDF)
Corradi, N., Gangaeva, A., and Keeling, P. J. 2008. Comparative profiling of overlapping transcription in the compacted genomes of microsporidia
Antonospora locustae and Encephalitozoon cuniculi. Genomics 91, 388-893.
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Williams, B. A. P., Haferkamp, I. and Keeling, P. J. 2008. An ADP/ATP mitochondrial carrier protein in the microsporidian Antonospora
locustae. J. Mol. Biol. 375, 1249-1257. (PDF)
Carpenter, K. J., Waller, R. F. and Keelilng, P. J. 2008. Surface morphology of Saccinobaculus (Oxymonadida): implications for character
evolution and function in oxymonads. Protist, 159, 209-221. (PDF)
Keeling, P. J. 2008. Evolutionary biology - Bridge over troublesome plastids. Nature 451, 896-897.
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2007
Corradi, N., Akiyoshi, D. E., Morrison, H. G., Fend, X., Weiss, L. M., Tzipori, S., & Keeling, P. J. 2007. Patterns of genome evolution
between the compacter genomes of the microsporidian parasites Encephalitozoon cuniculi, Antonospora locustae and Enterocytozoon
bieneusi. PLoS One. 2(12): e1277. (PDF)
de Koning, A. P., Noble, G. P. Wong, J. Heiss, A. A., and Keeling, P. J. 2007. Envronmental PCR survey to determine the distribution of a non-canonical genetic code in uncultivable oxymonads. Env. Microbiol., 10(1), 65-74. (PDF)
Noble, G. P. Rogers, M. B. & Keeling, P. J. 2007. Complex distribution of EFL and EF-1alpha proteins in the green algal lineage. BMC Evol. Biol. 7, 82. (PDF)
Imanian, B. and Keeling, P. J. 2007. The dinoflagellates Durinskia baltica and Kryptoperidinium foliaceum retain functionally overlapping mitochondria from two evolutionarily distinct lineages. BMC Evol. Biol. 7, 172. (PDF)
Jackson, C., Norman, J. E., Schnare, M. N., Gray, M. W., Keeling, P. J. and Waller, R. F. 2007. Broad genomic and transcriptional analysis reveals a highly derived genome in dinoflagellate mitochondria. BMC Biol. 5, 41. (PDF)
Keeling, P. J. 2007. Deep questions in the tree of life. Science 317, 1875-1876. (PDF)
Slamovits, C. H., Saldarriaga, J. F., Larocque, A. and Keeling, P. J. 2007. The highly reduced and fragmented mitochondrial genome of the
early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes. J. Mol. Biol.
372, 356-368. (PDF)
Rogers, M. B., Patron, N. J. and Keeling, P. J. Horizontal transfer of a eukaryotic plastid-targeted protein to cyanobacteria. BMC Biol. 5, 26.
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Rogers, M. B., Watkins, R. F., Harper, J. T., Durnford, D. G., Gray, M. W. and Keeling, P. J. 2007. A complex distribution of three eukaryotic
genes derived by lateral gene transfer. BMC. Evol. Biol. 7, 89. (PDF)
Patron, N. J., Inagaki, Y., and Keeling, P. J. 2007. Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages.
Curr. Biol. 17, 887-891. (PDF)
Rogers, M. B., Gilson, P. R., Su, V., McFadden, G. I. and Keeling, P. J. 2007. The complete chloroplast genome of the chlorarachniophyte
Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Mol. Biol. Evol. 24, 54-62.
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Keeling, P. J. 2007. Ostreococcus tauri: seeing though the genes to the genome. Trends Genet. 23, 151-154.
(PDF)
Akiyoshi, D. E., Weiss, L. M., Feng, X., Williams, B. A. P., Keeling, P. J., Zhang, Q. & Tzipori, S. 2007. Analysis of the beta-tubulin genes
from Enterocytozoon bieneusi isolates from human and rhesus macaque. J. Eukaryot. Microbiol. 54, 38-41.
(PDF)
Burri, L. and Keeling, P. J. 2007. Protein targeting to cryptic mitochondria of parasitic protists. Int. J. Parasitol. 37, 265-272.
(PDF)
Imanian, B., Carpenter, K. J. & Keeling P. J. 2007. The mitochondrial genome of a tertiary endosymbiont retains gene for electron transport
proteins. J. Eukaryot. Microbiol. 54, 146-153. (PDF)
Koziol, A., Borza, T., Ishida, K.-I., Keeling, P. J., Lee, R. W. and Durnford, D. G. 2007. Tracing the evolution of the light-harvesting antennae
in chlorophyll a/b-containing organisms. Plant Physiol. 143, 1802-1816. (PDF)
Carpenter, K. J and Keeling, P. J. 2007. Morphology and phylogenetic position of Eucomonympha imla (Parabasalia: Hypermastigida). J. Eukaryot.
Microbiol. 54, 263-270. (PDF)
Noble, G. P., Rogers, M. B. and Keeling, P. J. 2007. Complex distribution of EFL and EF-1a proteins in the green algal lineage. BMC Evol. Biol. 7, 82.
(PDF)
2006
Gile, G. H., Patron, N. J. and Keeling, P. J. 2006. EFL GTPase and the distribution of EFL and EF-1a in chromalveolates. Protist, 157, 435-444.
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Heiss, A. A. & Keeling, P. J. 2006. The phylogenetic position of the oxymonad Saccinobaculus based on SSU rRNA. Protist, 157, 335-344.
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Eisen, J. A., Wu, M., Wu, D., Thiagarajan, M., Wortman, J., Badger, J. H., Ren, Q., Amedeo, P., Jones, K. M., Tallon, L. J., Delcher, A. L.,
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Garg, J., Pearlman, R. E., Karrer, K. M., Sun, L., Smith, R. K., Manning, G., Elde, N. C., Turkewitz, A. P., Asai, D. J., Wilkes, D. E., Wang, Y., Cai,
H., Collins, K., Wilamoqska, K., Ruzzo, W. L., Weinberg, Z., Stewart, B. A., Lee, S. R., Wloga, D, Rogowski, K., Frankel, J., Gaertig, J., Tsao, C. C.,
Gorovsky, M. A., Keeling, P. J., Waller, R. F., Patron, N. J., Cherry, J. M., Stover, N. A., Krieger, C. J., Hamilton, E. P., Orias, E. Coyne, R. S.
2006. Macronuclear genome sequence of the ciliate Tetrahymean thermophila, a model eukaryote. PLoS Biology. 4, e268. (PDF)
Waller, R. F. & Keeling, P. J. 2006. Alveolate and chlorophycean mitochondrial cox2 split twice independently. Gene 383, 33-37. (PDF)
Gould, S. B., Sommer, M. S., Kroth, P., Gile, G. H., Keeling, P. J., & Maier, U.-G. 2006. Nucleus-to-nucleus gene transfer and protein retargeting
into a remnant cytoplasm of cryptophytes and diatoms. Mol. Biol. Evol. 23, 2413-2422. (PDF)
Burri, L. Williams, B. A. P., Bursac, D. Lithgow, T. & Keelilng, P. J. 2006. Progressive reduction of complexity in the mitosomal targeting
machinery of microsporidian parasites. Proc. Natl. Acad. Sci. USA 103, 15916-15920. (PDF)
Waller, R.
F., Slamovits, C. H. & Keeling, P. J. 2006. Lateral transfer of a multigene
region from cyanobacteria to dinoflagellates resulting in a novel plastid-targeted
fusion protein. Mol. Biol. Evol., 23, 1437-1443. ( PDF)
Slamovits,
C. H., Burri, L., and Keeling, P. J. 2006. Characterisation of a divergent
Sec61beta in microsporidia. J. Mol. Biol., 359, 1196-1202. ( PDF)
Gilson, P.
R., Su, V., Slamovits, C. H., Reith, M. E., Keeling, P. J. & McFadden, G.
I. 2006. Complete nucleotide sequence of the chlorarachniophyte nucleomorph:
Natureís smallest nucleus. Proc. Natl. Acad. Sci. USA, 103, 9566-9571.
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Patron, N.
J., Rogers, M. B. and Keeling, P. J. 2006. Comparative rates of evolution
in endosymbiotic nuclear genomes. BMC Evol. Biol., 6, 46. ( PDF)
Waller, R.
F., Patron, N. J., & Keeling, P. J. 2006. Phylogenetic history of plastid-targeted
proteins in peridinin-containing dinoflagellates. Int. J. System. Evol.
Microbiol. 56, 1429-1447.( PDF)
Keeling,
P. J. & Brugerolle, G. 2006. Evidence from SSU rRNA phylogeny that Octomitus
is a sister lineage to Giardia. Protist, 157, 205-212. ( PDF)
Slamovits,
C. H. & Keeling, P. J. 2006. A high density of ancient spliceosomal introns
in oxymonad excavates. BMC Evol. Biol., 6, 34. ( PDF)
De Koning,
A. P. & Keeling, P. J. 2006. The complete plastid genome sequence of the parasitic
green alga Helicosporidium is highly reduced and structured. BMC
Biology. 4, 12. ( PDF)
Patron, N.
J., Waller, R. W. & Keeling, P. J. 2006. A tertiary plastid uses genes from
two endosymbionts. J. Mol. Biol. 357, 1373-1382.( PDF)
Slamovits,
C. H. & Keeling, P. J. 2006. Pyruvate-phosphate dikinase from the oxymonad
Streblomastix strix and the evolution of pyrophosphate-dependent glycolysis
in anaerobic eukaryotes. Eukaryot. Cell , 5, 148-154. ( PDF)
2005
Keeling,
P.J., Burger, G., Durnford, D.G., Lang, B.F., Lee, R.W., Pearlman, R.E., Roger,
A.J., and Gray, M.W. 2005. The tree of eukaryotes. Trends in Ecology and
Evolution, 20(12), 670-676. ( PDF)
Keeling,
P.J. and Slamovits, C.H. 2005. Causes and effects of nuclear genome reduction.
Curr. Opin. Genet. Dev. 15(6), 601-608. ( PDF)
Patron, N.
J. and Keeling, P. J. 2005. Common evolutionary origin of starch biosynthetic
enzymes in green and red algae. J. Phycol. 41, 1131-1141. ( PDF)
Williams,
B. A. P., Slamovits, C. H., Patron, N. J., Fast, N. M., and Keeling, P. J.
2005. A high frequency of overlapping gene expression in compacted eukaryotic
genomes. Proc. Natl. Acad. Sci. USA 102 , 10936-10941. ( PDF)
Takishita,
K., Patron, N. J., Ishida, K.-I., Maruyama, T., and Keeling, P. J. 2005. A
transcriptional fusion of genes encoding glyceraldehydes-3-phosphate dehydrogenase
(GAPDH) and enolase in dinoflagellates. J. Eukaryot. Microbiol. 52 ,
343-348. ( PDF)
Williams,
B. A. P. and Keeling, P. J. 2005. Microsporidian m itochondrial
proteins: expression in Antonospora locustae spores and identification
of two novel genes. J. Eukaryot. Microbiol. 52 , 271-276. ( PDF)
Patron,
N. J., Waller, R.
F., Archibald, J. M. and Keeling, P. J. 2005. Complex protein targeting to
dinoflagellate plastids. J. Mol. Biol. 348 , 1015-1024. ( PDF)
de Koning,
A. P., Tartar, A., Boucias, D. G., and Keeling, P. J. 2005. Expressed sequence
tag (EST) survey of the highly adapted green algal parasite, Helicosporidium.
Protist 156 , 181-190. ( PDF)
Keeling,
P. J., Williams, B. A. P., Law, J., Fast, N. M., and Slamovits, C. H. 2005.
Comparative genomics of microsporidia. Folia Parasitol. 52 ,
8-14. ( PDF)
Harper, J.
T., Waanders, E. & Keeling, P. J. 2005. On the monophyly of chromalveolates
using a six-protein phylogeny of eukaryotes. Int. J. System. Evol. Microbiol.,
55, 487-496. ( PDF)
Likic, V.
A., Perry, A. Hulett, J., Derby, M., Traven, A., Waller, R. F., Keeling, P.
J., Koehler, C. M., Curran, S. P., Gooley, P. R., and Lithgow, T. 2005. Patterns
that define the four domains conserved in known and novel isoforms of the
protein import receptor Tom20. J. Mol. Biol. 347, 81-93. ( PDF)
2004
Keeling,
P J., Archibald, J. M., Fast, N. M. and Palmer, J. D. 2004. The evolution
of modern eukaryotic phytoplankton. Science, 306, 2191. ( PDF)
McEwan, M.
L. and Keeling, P. J. 2004. HSP90, tubulin and actin are retained in the tertiary
endosymbiont genome of Kryptoperidium foliaceum. J. Eukaryot. Microbiol.
51, 651-659. ( PDF)
Keeling,
P. J. and Slamovits, C. H. 2004. Simplicity and complexity of microsporidian
genomes. Eukaryotic Cell 3 , 1363-1369. ( PDF)
Keeling,
P. J. and Inagaki, Y. 2004. A class of eukaryotic GTPase with a punctate distribution
suggestiong multiple functional replacements of translation elongation factor-1
alpha. Proc. Natl. Acad. Sci. USA 101 , 15380-15385. ( PDF)
Patron, N.
J., Rogers, M. B. and Keeling, P. J. 2004. Gene replacement of fructose-1,6-bisphophate
aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates.
Eukaryot. Cell. 3 , 1169-1174. ( PDF)
de Koning,
A. P. & Keeling, P. J. 2004. Nucleus-encoded plastid-targeted genes in
Helicosporidium:functional diversity of a cryptic plastid in a parasite.
Eukaryot. Cell, 3, 1198-1205. ( PDF)
Rogers. M.
B., Archibald, J. M., Field, M. A., Li, C, Striepen, B. & Keeling, P.
J. 2004. Plastid-targeting peptides from the chlorarachniophyte Bigelowiella
natans. J. Eukaryot. Microbiol., 51 , 529-535. ( PDF)
Harper, J.
T. & Keeling, P. J. 2004. Lateral transfer and the complex distribution
of insertions in eukaryotic enolases. Gene, 340 , 227-235.
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Keeling,
P. J. 2004. Diversity and evolutionary history of plastids and their hosts.
Am. J. Bot., 91, 1481-1493. ( PDF)
Slamovits,
C. H. and Keeling, P. J. 2004. Class II photolyase in a microsporidian intracellular
parasite. J. Mol. Biol., 341 , 713-721. ( PDF)
Rogers, M.
B. & Keeling, P. J. 2004. Lateral transfer and re-compartmentalisation in
Calvin cycle enzymes in plants and algae. J. Mol. Evol., 58 ,
367-375. ( PDF)
Leander,
B. S. & Keeling, P. J. 2004. Symbiotic innovation in the oxymonad Streblomastix
strix. J. Eukaryot. Microbiol., 51 , 291-300. ( PDF)
Slamovits,
C. H., Fast, N. M., Law, J. S. & Keeling, P. J. 2004. Genome compaction
and stability in microsporidian intracellular parasites. Curr. Biol.,
14 , 891-896. ( PDF)
Leander,
B. S. & Keeling, P. J. 2004. Early evolution of dinoflagellates and apicomplexans
inferred from HSP90 and actin phylogeny. J. Phycol., 40 ,
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Keeling,
P. J. 2004. Polymorphic insertions and deletions in parabasalian enolase genes.
J. Mol. Evol., 58 , 550-556. ( PDF)
Archibald,
J. M. & Keeling, P. J. 2004. The evolutionary history of plastids: a molecular
phylogenetic perspective. In. Organelles, Genomes and Eukaryote Evolution.
Hirt, R. P. & Horner, D. (eds.), Taylor & Francis, London. Pp. 55-74.
Keeling,
P. J. 2004. Reduction and compaction in the genome of the apicomplexan parasite,
Cryptosporidium parvum. Develop. Cell, 6 , 614-616.
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Gerbod,
D., Sanders, E., Moriya, S., Noël, C. Takasu, H., Fast, N. M., Delgado-Viscogliosi,
P., Ohkuma, M. Judo, T., Capron, M., Palmer, J. D., Keeling, P. J. & Viscogliosi,
E. 2004. Molecular phylogenies of Parabasalia inferred from four protein genes
and comparison with rRNA trees. Mol. Phyl. Evol., 31 ,
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Archibald,
J. M. & Keeling, P. J. 2004. Actin and ubiquitin protein sequences support
a cercozoan/foraminieran ancestryfor the plasmodiophorid plant pathogens.
J. Eukaryot. Microbiol. 51 , 113-118. ( PDF)
Saldarriaga,
J. F., Taylor, F. J. R., Cavalier-Smith, T., Menden-Deuer, S., & Keeling,
P. J. 2004. Molecular data and the evolutionary history of dinoflagellates.
Europ. J. Protistol., 40 , 85-111. (PDF)
Slamovits,
C. S., Williams, B. A. P., and Keeling, P. J. 2004. Transfer of Nosema
locustae (Microsporidia) to Antonospora locustae n. com. based
on molecular and ultrastructural data. J. Eukaryot. Microbiol. 51 ,
207-213. ( PDF)
Keeling,
P. J. 2004. A brief history of plastids and their hosts. Protist. 155 ,
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Leander,
B. S., Harper, J. T. & Keeling, P. J. 2004. Molecular phylogeny and surface
morphology of marine aseptate gregarines (Apicomplexa): Selenidium
and Lecudina. J. Parasitol., 89 , 1191-1205. ( PDF)
2003
Leander,
B. S., Kuvardine, O. N., Aleshin, V. V., Myl'nikov, A. P., & Keeling, P. J.
2003 . Molecular phylogeny and surface morphology of Colpodella edax
(Alveolata): insights into the phagotrophic ancestry of apicomplexans. J.
Eukaryot. Microbiol. 50 , 334- 340. ( PDF)
Fast, N.
M., Law, J. S., Williams, B. A. P. & Keeling, P. J. 2003. A bacterial gene
for catalase in the microsporidian Nosema locustae: implications for
microsporidian metabolism and genome evolution. Eukaryot. Cell, 2 ,
1069-1075. ( PDF)
Longet, D.,
Archibald, J. M., Keeling, P. J. & Pawlowski, J. 2003. Foraminifera and Cercozoa
share a common origin according to RNA polymerase II phylogenies. Int.
J. Syst. Evol. Microbiol. 53 , 1735 - 1739. ( PDF)
Harper, J.
T. & Keeling, P. J. 2003. Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids.
Mol. Biol. Evol. 20 , 1730-1735. ( PDF)
Archibald,
J. M., Rogers, M. B., Toop, M., Ishida, K.-I. & Keeling, P. J. 2003.
Lateral gene transfer and the evolution of plastid-targeted proteins in the
secondary plastid-containing alga, Bigelowiella natans. Proc. Natl.
Acad. Sci. USA. 100 , 7678-7683. ( PDF)
( Commentary)
Waller, R.
F., Keeling, P. J., van Dooren, G. & McFadden, G. I. 2003. The origin of the
apicomplexan plastid: a response from the red corner. Science, 301 ,
49A. ( PDF)
Williams,
B. A. P. & Keeling, P. J. 2003. Cryptic organelles in parasitic protists and
fungi. Adv. Parasitol., 54 , 9-67. ( PDF)
Leander,
B. S. & Keeling, P. J. 2003. Morphostasis in alveolate evolution. Trends
Ecol. Evol., 18, 395-402. ( PDF)
Ryall, K.
Harper, J. T. & Keeling, P. J. 2003. Plastid-derived Type II fatty acid biosynthetic
enzymes in chromists. Gene 313 , 139-148. ( PDF)
Archibald,
J. M., Teh, E. M. & Keeling, P. J. 2003. Novel ubiquitin fusion proteins:
ribosomal protein P1 and actin. J. Mol. Biol., 328 , 771-778.
( PDF)
Keeling,
P. J. 2003. Congruent evidence from alpha-tubulin and beta-tubulin gene phylogenies
for a zygomycete origin of microsporidia. Fung. Genet. Biol., 38 ,
298-309. ( PDF)
2002
Saldarriaga,
J. F., Leander, B. S., Taylor, F. J. R., & Keeling, P. J. 2002. Lessardia
elongata gen. et sp. nov. (Dinoflagellata, Peridiniales, Podolampaceae)
and the taxonomic position of the genus Roscoffia. J. Phycol.
39 , 368-379. ( PDF)
Keeling,
P. J. & Leander, B. S. 2003. Characterisation of a non-canonical genetic
code in the oxymonad Streblomastix strix. J. Mol. Biol., 326 ,
1337-1349. ( PDF)
Archibald,
J. M., Longet, D., Pawlowski, J. & Keeling, P. J. 2002. A novel polyubiquitin
structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup.
Mol. Biol. Evol. 20 , 62-66. ( PDF)
Archibald,
J. M & Keeling, P. J. 2002. Plant genomes: cyanobacterial genes revealed.
Heredity 90 , 2-3. ( PDF)
Kuvardina,
O. N., Leander, B. S., Aleshin, V. V., Myl'nikov, A. P., Keeling, P. J., and
Simdyanov, T. G. 2002. Phylogeny of colpodellids (Alveolata) as inferred from
small subunit rRNA gene sequences. J. Eukaryot. Microbiol., 49 ,
498-504. ( PDF)
Saldarriaga,
J. F., McEwan, M. L., Fast, N. M., Taylor, F. J. R., & Keeling, P. J.
2002. Multiple protein phylogenies show that Oxyhrris marina and Perkinsus
marinus are early branches of the dinoflagellate lineage. Int. J. Sys.
Evol. Microbiol., 53 , 355-365. ( PDF)
Leander,
B. S., Clopton, R. E. & Keeling, P. J. 2002. Phylogeny of gregarines (Apicomplexa)
as Inferred from SSU rDNA and ß-Tubulin. Int. J. System. Evol. Microbiol,
53 , 345-354. ( PDF)
Leander,
B. S., Saldarriaga, J. F., & Keeling, P. J. 2002. Surface morphology of the
marine parasite Haplozoon axiothellae Siebert (Dinoflagellata). Eur.
J. Protistol. 38 , 287-298. ( cover)
( PDF)
Keeling,
P. J. 2002. Molecular phylogenetic position of Trichomitopsis termopsidis
(Parabasalia) and evidence for the Trichomitopsiinae. Eur. J. Protistol.,
38 , 279-286. ( PDF)
Archibald,
J. M. & Keeling, P. J. 2002. Recycled plastids: a "green movement"
in eukaryotic evolution. Trends Genet., 18 , 577-584. ( PDF)
Brinkman,F.S.L.,
Blanchard, J.L., Cherkasov, A., Av-Gay, Y., Brunham, R.C., Fernandez, R.C.,
Finlay, B.B., Otto, S.P., Ouellette, B.F.F., Keeling, P. J., Rose, A.M., Hancock,
R.E.W. and Jones, S.J.M. 2002. Evidence that plant-like genes in Chlamydia
species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria
and the chloroplast. Genome Research. 12, 1-9. ( PDF)
Keeling,
P. J. & Fast, N. M. 2002. Microsporidia: Biology and evolution of highly
reduced intracellular parasites. Ann. Rev. Microbiol. 56 , 93-116.
( PDF)
2001
Keeling,
P. J. 2001. Parasites go the Full Monty. Nature 414 , 401-402.
( PDF)
Fast, N.
M., Xue, L., Bingham, S. & Keeling, P. J. 2001. Re-examining Alveolate Phylogeny
Using Multiple Protein Molecular Phylogenies . J. Eukaryot. Microbiol.
49, 30-37. ( PDF)
Fast, N.
M. & Keeling, P. J. 2001. Alpha and beta subunits of pyruvate dehydrogenase
E1 from the microsporidian Nosema locustae: Mitochondrion-derived carbon
metabolism in microsporidia. Mol. Biochem. Parasitol. 117 , 201-209.
( PDF)
Keeling,
P. J. & Palmer, J. D. 2001. Lateral transfer at the gene and subgenic levels
in the evolution of eukaryotic enolase. Proc. Natl. Acad. Sci. USA
98 , 10745-10750. ( PDF).
Saldarriaga,
J. F., Taylor, F. J. R., Keeling, P. J. & Cavalier-Smith, T. 2001. Dinoflagellate
18S rRNA phylogeny suggests multiple plastid losses and replacements. J.
Mol. Evol. 53 , 204-213. ( PDF)
Qian, Q.
& Keeling, P. J. 2001, Diplonemid glyceraldehyde-3phosphate dehydrogenase
(GAPDH) and prokaryote-to-eukaryote lateral gene transfer. Protist
152 , 193-201. ( PDF)
Fast, N.
M., & Keeling, P. J. 2001. A common origin for alveolate and heterokont plastids.
(translated to Japanese by K. Ishida) Jpn. J. Phycol. 49 , 137-140.
Keeling,
P. J. 2001. Foraminifera and Cercozoa are related in actin phylogeny: Two
orphans find a home? Mol. Biol. Evol. 18 , 1551-1557. ( PDF)
Fast, N.
M., Kissinger, J. C., Roos, D. S., & Keeling, P. J. 2001. Nuclear-encoded,
plastid-targeted genes suggest a single common origin for apicomplexan and
dinoflagellate plastids. Mol. Biol. Evol., 18 , 418-426. ( PDF)
Frankel,
J. Williams, N. E., Nelsen, E. M. & Keeling, P. J. 2001. An evaluation of
Hsp90 as a mediator of cortical patterning in Tetrahymena. J. Eukaryot.
Microbiol. 48 ,147-168. ( PDF)
2000
de Koning,
A. P., Brinkman, F., Jones, S. & Keeling, P. J. 2000. Lateral gene transfer
and metabolic adaptation in the human parasite Trichomonas vaginalis.
Mol. Biol. Evol. 17 , 1769-1773. ( Citation)
( PDF)
Stibitz,
T. A., Keeling, P. J., & Bhattacharya, D. 2000. Symbiotic origin of a novel
actin gene in the cryptophyte Pyrenomonas helgolandii. Mol. Biol.
Evol. 17 , 1731-1738. ( Abstract)
( PDF)
Keeling,
P. J. & Palmer, J. D. 2000. Parabasalian flagellates are ancient eukaryotes.
Nature 405 , 635-63. ( Citation)
( PDF)
Keeling,
P. J., Luker, M. A. & Palmer, J. D. 2000. Evidence from beta-tubulin that
microsporidia evolved from fungi. Mol. Biol. Evol. 17 , 1-9.
( Abstract)
( PDF)
1999
Keeling,
P. J., Palmer, J. D., Donald, R. G. K., Roos, D. S., Waller, R. F., &
McFadden, G. I. 1999. Shikimate in Apicomplexa. Nature 397 ,
219-220. (Citation) (PDF)
Keeling,
P. J., Deane, J. A., Hink-Schauer, C., Douglas, S., Maier, U.-G. & McFadden,
G.I. 1999. The secondary symbiont of the cryptomonad Guillardia theta
contains alpha, beta, and gamma-tubulins. Mol. Biol. Evol. 16 ,
1308-1313. ( Abstract)
( PDF)
Keeling,
1998
P. J., Poulson, N. & McFadden, G.I. 1998. Phylogenetic diversity of parabasalian
symbionts from dry-wood and damp-wood termites, and the phylogentic place
of Pseudotrypanosoma giganteum and Trichonympha magna. J.
Eukaryot. Microbiol. 45 , 643-650. ( Abstract)
Keeling,
P. J. & McFadden, G. I. 1998. Origins of microsporidia. Trends Microbiol.
6 , 19-23. ( Citation)
( PDF)
Waller,
R. F., Keeling, P. J., Donald, R. G. K., Striepen, B., Handman, E., Lang-
Unnasch, N., Cowman, A. F., Besra, G. S., Roos, D. S. & McFadden, G. I.
1998. Nuclear-encoded proteins target to the plastid in Toxoplasma gondii
and Plasmodium falciparum. Proc. Natl. Acad. Sci. USA 95 ,
12352-12357. ( Abstract)
( PDF)
Keeling,
P. J., Fast, N. M. & McFadden, G. I. 1998. Evolutionary relationship
between translation initiation factor eIF-2 gamma and selenocysteine- specific
elongation factor SELB: Change of function in translation factors. J. Mol.
Evol. 47 , 649-655. ( Abstract)
( PDF)
Keeling,
P. J., Deane, J. A. & McFadden, G.I. 1998. The phylogenetic position of
alpha- and beta-tubulins from the Chlorarachnion host and Cercomonas
(Cercozoa).J. Eukaryot. Microbiol. 45 , 561-570. ( Abstract)
Keeling,
P. J. 1998. A Kingdom's progress: Archezoa and the origin of eukaryotes. BioEssays
20 , 87-95. ( PDF)
Keeling,
P. J., Klenk, H.-P., Singh, R. K., Schenk, M. E., Sensen, C. W., Zillig, W.
& Doolittle, W. F. 1998. Sulfolobus islandicus plasmids pRN1 and
pRN2 share distant but common evolutionary ancestry. Extremophiles
2 , 391-393. ( Abstract)
( PDF)
1997
Keeling,
P. J. & Doolittle, W. F. 1997. Evidence that eukaryotic triosephosphate
isomerase is of alpha-proteobacterial origin. Proc. Natl. Acad. Sci. USA
94 , 1270-1275. ( Abstract)
(PDF)
Keeling,
P. J. & Doolittle, W. F. 1997. Widespread and ancient distribution of
a noncanonical genetic code in diplomonads. Mol. Biol. Evol. 14 ,
895-901. ( Abstract)
(PDF)
Keeling,
P. J. 1997. Why TAR for glutamine? J. Mol. Evol. 45 , 207-208.
(PDF)
1996
Keeling,
P. J. & Doolittle, W. F. 1996. A non-canonical genetic code in an early-
diverging eukaryotic lineage. EMBO J. 15 , 2285-2290. ( Abstract) (PDF)
Keeling,
P. J. & Doolittle, W. F. 1996. Alpha-tubulins from early-diverging lineages:
The divergence and evolution of the tubulin family. Mol. Biol. Evol.
13 , 318-326. ( Abstract)
(PDF)
Keeling,
P. J., Doherty-Kirby, A. L., Teh, E. M. & Doolittle, W. F. 1996. Linked
genes for calmodulin and E2 ubiquitin-conjugating enzyme in Trichomonas
vaginalis. J. Eukaryot. Microbiol. 43 , 468-474. ( Abstract)
Keeling,
P. J., Baldauf, S. L., Doolittle, W. F., Zillig, W. & Klenk, H.-P. 1996.
An infB-homologue in Sulfolobus acidocaldarius. System. App.
Microbiol. 19 , 312-321.
Keeling.
P. J. & Logsdon, J. M. Jr. 1996. Highly-divergent Caenorhabditis
and Saccharomyces tubulins evolved recently from gamma-tubulin genes.
Trends Cell Biol. 6 , 375. ( PDF)
Keeling,
P. J., Klenk, H.-P., Singh, R. K., Feeley, O., Schleper, C., Zillig, W., Doolittle,
W. F. & Sensen, C. W. 1996. Complete nucleotide sequence of the Sulfolobus
islandicus multicopy plasmid pRN1. Plasmid 35 , 41-144.
( Abstract)
( PDF)
Keeling,
P. J. & Doolittle, W. F. 1996. Methionine aminopeptidase-1: The MAP
of the mitochondrion? Trends Biochem. Sci. 21 , 285-286. ( Citation)
( PDF)
1995
Keeling,
P. J. & Doolittle, W. F. 1995. Archaea: Narrowing the gap between prokaryotes
and eukaryotes. Proc. Natl. Acad. Sci. USA 92 , 5761-5764. ( Citation)
( PDF)
Keeling,
P. J. & Doolittle, W. F. 1995. Concerted evolution in protists: A polyubiquitin
gene from Trichomonas vaginalis. J. Mol. Evol. 41 , 556-
562. ( Abstract)
Keeling,
P. J. & Roger, A. J. 1995. The selfish pursuit of sex. Nature 375 ,
283. ( Citation)
Keeling,
P. J. & Doolittle, W. F. 1995. An archaebacterial eIF-1A: New grist for
the mill. Mol. Microbiol. 17 , 399-400. ( Citation)
1994
Keeling,
P. J., Charlebois, R. L. & Doolittle, W. F. 1994. Archaebacterial genomes:
Eubacterial form, eukaryotic content. Curr. Opin. Genet. Dev. 4 :816-822.
( Citation)
Roger, A.
J., Keeling, P. J. & Doolittle, W. F. 1994. Introns, the broken transposons.
Soc. Gen. Physiol. Ser. 49 , 27-37. ( Citation)
